Index

_

__getitem__() (dinf.Store method)

__len__() (dinf.Store method)

A

assert_complete() (dinf.Store method)

B

BagOfVcf (class in dinf) BinnedHaplotypeMatrix (class in dinf)

bounds_contain() (dinf.Param method) (dinf.Parameters method)

C

check() (dinf.DinfModel method)

D

dinf.plot module

DinfModel (class in dinf) Discriminator (class in dinf) discriminator_network (dinf.DinfModel attribute)

E

entropy() (in module dinf.plot)

ExchangeableCNN (class in dinf) ExchangeablePGGAN (class in dinf)

F

feature() (in module dinf.plot) FeatureCollection (in module dinf) features() (in module dinf.plot) filename (dinf.DinfModel attribute) fit() (dinf.Discriminator method) from_file() (dinf.DinfModel static method) (dinf.Discriminator class method)

from_ts() (dinf.BinnedHaplotypeMatrix method) (dinf.HaplotypeMatrix method) (dinf.MultipleBinnedHaplotypeMatrices method) (dinf.MultipleHaplotypeMatrices method) from_vcf() (dinf.BinnedHaplotypeMatrix method) (dinf.HaplotypeMatrix method) (dinf.MultipleBinnedHaplotypeMatrices method) (dinf.MultipleHaplotypeMatrices method)

G

generator_func (dinf.DinfModel attribute) generator_func_v (dinf.DinfModel attribute)

geometric_median() (dinf.Parameters static method) get_contig_lengths() (in module dinf) get_samples_from_1kgp_metadata() (in module dinf)

H

HaplotypeMatrix (class in dinf) high (dinf.Param attribute)

hist() (in module dinf.plot) hist2d() (in module dinf.plot)

I

increment() (dinf.Store method)

itransform() (dinf.Param method) (dinf.Parameters method)

L

lengths (dinf.BagOfVcf attribute)

load_results() (in module dinf) low (dinf.Param attribute)

M

mc() (in module dinf) mcmc() (in module dinf) metrics() (in module dinf.plot)

module dinf.plot MultipleBinnedHaplotypeMatrices (class in dinf) MultipleHaplotypeMatrices (class in dinf)

N

name (dinf.Param attribute)

P

Param (class in dinf) Parameters (class in dinf) parameters (dinf.DinfModel attribute)

pg_gan() (in module dinf) predict() (dinf.Discriminator method) (in module dinf)

R

reflect() (dinf.Param method) (dinf.Parameters method)

S

sample_ball() (dinf.Parameters method) sample_genotype_matrix() (dinf.BagOfVcf method) sample_kde() (dinf.Parameters method) sample_prior() (dinf.Param method) (dinf.Parameters method) sample_regions() (dinf.BagOfVcf method) samples (dinf.BagOfVcf attribute)

save_results() (in module dinf) shape (dinf.BinnedHaplotypeMatrix property) (dinf.HaplotypeMatrix property) (dinf.MultipleBinnedHaplotypeMatrices property) (dinf.MultipleHaplotypeMatrices property) Store (class in dinf) summary() (dinf.Discriminator method) Symmetric (class in dinf)

T

target_func (dinf.DinfModel attribute) to_file() (dinf.Discriminator method) top_n() (dinf.Parameters static method) train() (in module dinf) transform() (dinf.Param method) (dinf.Parameters method)

truncate() (dinf.Param method) (dinf.Parameters method) truth (dinf.Param attribute) ts_individuals() (in module dinf)